I need a network analysis tool to analyze network properties like clustering coefficient and average path length. My network contains around 18000 nodes and 352000 edges. I have tried Cytoscape's network analyzer plugin, but it is struggling to analyze data of this size.

Can anybody please recommend one which has the best performance among the many available.

asked Jun 09 '11 at 15:11

aseembehl's gravatar image

aseembehl
568913

edited Jun 09 '11 at 15:22


2 Answers:

You can use Gephi it provide the two requested statistics. Matlab can also be a way with the matlabBGL toolbox. I think that it also provides average path length and clustering coeeficient.

answered Jun 09 '11 at 16:32

come's gravatar image

come
712

Yeah, Gephi is exactly what I was looking for. Thanks.

(Jun 10 '11 at 05:07) aseembehl

Pegasus (http://www.cs.cmu.edu/~pegasus/) which runs on top of Hadoop might also be a good option for larger nets

answered Jun 10 '11 at 05:24

Arash%20Joorabchi's gravatar image

Arash Joorabchi
313

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